| | Databases | Manuals | Programming | Web Servers | | |
| Databases | |
| PDB | RCSB Protein Data Bank |
| PubMed | Public Medline |
| SCOP | Structural Classification of Proteins |
| SMART | Identification and annotation of genetically mobile domains |
| Structural Biology Software Database | Pointers to software packages useful in structural biology |
| SWISS-PROT and TrEMBL | Protein Database |
| Manuals | |
| AutoDock | Docking of flexible ligands to proteins |
| GRID | |
| HMMER | Hidden Markov Model Package |
| LIGPLOT | Create ligand interaccion postscript plots |
| MODELLER | Comparative Modeling |
| MODELLER User List | Archives of Modeller User List |
| PHYLIP | |
| VMD | Molecular Visualization |
| Programming | |
| CPAN | Comprehensive Perl Archive Network (get your Perl modules from here) |
| Database Design Tutorial (UML and SQL) | |
| Numerical Recipes | Online version of Numerical Recipes books (C,f77,f90) |
| Perl.com | Everything for and about Perl |
| PHP | misc PHP info |
| SQL .org | online resources for SQL |
| Web Servers | |
| 123D+ | Protein Sequence -> Structure Threading |
| BLAST | Sequence Similarity Searches |
| ClustalW | Multiple Alignments & Phylogenetic Trees |
| MPEX | Membrane Protein Explorer (Topology, Hydropathy Plots) |
| PDB to MultiGIF | Takes a 3D structure (PDB file) and generates an animated image |
| ROBETTA | full-chain protein structure prediction server |
| SiteHound | Ligand binding site detection in protein structures |
| TMHMM | Prediction of transmembrane helices in proteins |